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CMK protein (Phaeodactylum tricornutum) - STRING interaction network
"CMK" - 4-diphosphocytidyl-2c-methyl-d-erythritol kinase in Phaeodactylum tricornutum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMK4-diphosphocytidyl-2c-methyl-d-erythritol kinase (355 aa)    
Predicted Functional Partners:
Phatr12330
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (159 aa)
 
 
  0.987
Phatr21829
Predicted protein (271 aa)
 
 
  0.985
DXR
1-deoxy-d-xylulose-5-phosphate reductoisomerase (402 aa)
   
   
  0.832
HDS
Putative chloroplast 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (757 aa)
   
 
  0.828
Phatr19122
Predicted protein (322 aa)
 
   
  0.802
Phatr14857
2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase (119 aa)
   
 
  0.753
DXS
Precursor of synthase DXS 1-deoxy-d-xylulose-5-phosphate synthase (730 aa)
 
   
  0.729
HDR
Putative plastid isopentenyl diphosphate/dimethylallyl diphosphate synthase (401 aa)
 
     
  0.636
Phatr3351
Predicted protein (281 aa)
   
   
  0.550
Phatr22113
Bifunctional aspartokinase (870 aa)
   
 
  0.517
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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