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Rab18 protein (Phaeodactylum tricornutum) - STRING interaction network
"Rab18" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rab18Predicted protein (213 aa)    
Predicted Functional Partners:
Phatr42274
Predicted protein (194 aa)
     
  0.854
RabGDI
Predicted protein (446 aa)
     
 
  0.848
Phatr33914
Predicted protein (152 aa)
       
  0.830
Phatr10670
Predicted protein (152 aa)
       
  0.785
Phatr21198
Predicted protein (205 aa)
       
  0.759
RabX2
Predicted protein (229 aa)
   
 
0.756
Phatrdraft998
Predicted protein (230 aa)
   
 
0.755
PtRabX1
Predicted protein (230 aa)
   
 
0.755
Phatr12157
Predicted protein (330 aa)
       
 
  0.743
Phatr9033
Predicted protein (268 aa)
     
  0.739
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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