STRINGSTRING
RAD50 protein (Phaeodactylum tricornutum) - STRING interaction network
RAD50 recombination protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAD50RAD50 recombination protein (1436 aa)    
Predicted Functional Partners:
MRE11
Predicted protein (550 aa)
   
  0.997
SMC3
Predicted protein (1232 aa)
   
  0.895
Phatr44708
Predicted protein (790 aa)
     
  0.887
Phatr45914
Predicted protein (746 aa)
     
  0.883
RPA1
Replication protein a large 70 kD subunit (606 aa)
     
  0.863
Phatr48206
Predicted protein (794 aa)
   
  0.853
Phatr46734
Predicted protein (894 aa)
   
  0.853
Phatr36531
Type II DNA topoisomerase VI subunit (432 aa)
     
  0.852
TOP6A
Type II DNA topoisomerase VI subunit (430 aa)
     
  0.852
Rad22
Predicted protein (468 aa)
       
  0.843
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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