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STRINGSTRING
Phatr51897 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr51897" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr51897Predicted protein (531 aa)    
Predicted Functional Partners:
Phatr46516
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)- acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation (1051 aa)
     
 
  0.998
Phatr32646
Predicted protein (268 aa)
     
 
  0.998
BMS1
Ribosome biogenesis protein BMS1 (1096 aa)
     
 
  0.997
Phatr49433
Predicted protein (705 aa)
     
 
  0.997
Phatr15481
Predicted protein (482 aa)
     
 
  0.997
Phatr42495
Predicted protein (1233 aa)
     
 
  0.996
Phatr46994
U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA (730 aa)
     
 
  0.996
Phatr6258
Predicted protein (205 aa)
     
   
  0.995
Phatr44687
Predicted protein (426 aa)
     
 
  0.995
Phatrdraft1637
Predicted protein (1253 aa)
     
 
  0.995
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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