STRINGSTRING
Phatr51897 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr51897" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr51897Predicted protein (531 aa)    
Predicted Functional Partners:
Phatr32646
Predicted protein (268 aa)
     
 
  0.997
Phatr42495
Predicted protein (1233 aa)
     
 
  0.997
Phatr32758
Predicted protein (483 aa)
     
      0.996
Phatr30585
Predicted protein (942 aa)
     
      0.996
Phatr46994
Predicted protein (730 aa)
     
 
  0.995
Phatr45441
Predicted protein; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (379 aa)
     
 
  0.985
Phatr46837
Predicted protein (997 aa)
     
 
  0.985
Phatr44242
Predicted protein (890 aa)
     
 
  0.985
Phatr46516
Predicted protein (1051 aa)
     
 
  0.985
Phatr49433
Predicted protein (705 aa)
     
 
  0.985
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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