STRINGSTRING
hUbi protein (Phaeodactylum tricornutum) - STRING interaction network
"hUbi" - Predicted proteinUbiquitin extension protein 4 in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hUbiPredicted proteinUbiquitin extension protein 4 (381 aa)    
Predicted Functional Partners:
Phatr17324
Predicted protein (261 aa)
     
  0.981
Phatr17545
Predicted protein (261 aa)
     
  0.980
Phatr18559
40S ribosomal protein S6 (245 aa)
     
  0.980
Phatr31073
Predicted protein (188 aa)
     
  0.972
Phatr29097
Predicted protein (225 aa)
     
  0.970
Phatr17519
Predicted protein (143 aa)
     
  0.968
Phatr9199
Predicted protein (151 aa)
     
    0.967
Phatr6847
Predicted protein (167 aa)
     
  0.967
Phatr23748
Predicted protein (67 aa)
     
  0.966
Phatr28147
Predicted protein (62 aa)
     
  0.966
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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