STRINGSTRING
Phatr51953 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr51953" - Metacaspase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr51953Metacaspase (292 aa)    
Predicted Functional Partners:
Phatr55108
Heat shock factor (718 aa)
           
  0.477
CaM2
Calmodulin (154 aa)
           
  0.426
Phatr14561
Predicted protein (172 aa)
           
  0.426
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (260 aa)
           
  0.424
Phatr49253
Predicted protein (566 aa)
           
  0.422
Sit4
Silicon transporter (512 aa)
           
  0.420
Phatr23658
Flavodoxin (207 aa)
           
  0.420
Phatr13706
Flavodoxin (176 aa)
           
  0.420
APX1
Ascorbate peroxidase (261 aa)
           
  0.420
Phatr8717
Serine hydroxymethyltransferase; Interconversion of serine and glycine (464 aa)
           
  0.400
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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