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Phatr52110 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr52110" - Uncharacterized protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr52110Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family (427 aa)    
Predicted Functional Partners:
Phatr48664
Predicted protein (504 aa)
     
 
  0.907
Phatr40163
Predicted protein (371 aa)
         
    0.900
Phatr26649
O-phosphoseryl-tRNA(Sec) selenium transferase; Converts O-phosphoseryl-tRNA(Sec) to selenocysteinyl- tRNA(Sec) required for selenoprotein biosynthesis (512 aa)
   
 
  0.474
Phatr2217
Predicted protein (364 aa)
   
 
  0.474
Phatr15730
Predicted protein (442 aa)
   
 
  0.474
Phatr38005
Predicted protein (1005 aa)
   
 
  0.468
Phatr49601
Alanine glyoxylate aminotransferase (465 aa)
   
   
  0.418
Phatr43732
Predicted protein (1504 aa)
           
  0.405
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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