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Phatr5217 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr5217" - Pseudouridine synthase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr5217Pseudouridine synthase (216 aa)    
Predicted Functional Partners:
Phatr41702
Predicted protein (671 aa)
         
  0.718
Phatr24772
Predicted protein (801 aa)
         
  0.718
Phatr20773
Predicted protein (484 aa)
   
  0.673
Phatr11965
Predicted protein (194 aa)
   
  0.673
Phatr9894
Predicted protein (140 aa)
 
   
  0.613
Phatr6847
Predicted protein (167 aa)
   
 
  0.582
Phatr15757
Predicted protein (181 aa)
   
 
  0.582
Phatr27735
Predicted protein (538 aa)
   
   
  0.570
PHATR_3578
Pseudouridine synthase (293 aa)
   
   
  0.556
Phatr13361
Predicted protein (389 aa)
   
 
  0.553
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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