• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatr52285 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr52285" - Cleavage and polyadenylation specific factor in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr52285Cleavage and polyadenylation specific factor (1001 aa)    
Predicted Functional Partners:
Phatr42753
Predicted protein (1678 aa)
     
  0.999
Phatr50624
Uncharacterized protein (603 aa)
     
  0.998
PAF1
PolyAdenylation factor subunit 1 (402 aa)
     
  0.995
Phatr28482
Predicted protein (602 aa)
     
0.994
Phatr43779
Predicted protein (1317 aa)
     
 
  0.993
Phatr13834
Predicted protein (172 aa)
     
  0.979
Phatr45697
Predicted protein (1067 aa)
     
 
  0.972
Phatr8451
Predicted protein (76 aa)
     
 
  0.968
Phatr47180
Predicted protein (610 aa)
     
 
  0.967
Phatr46285
Predicted protein (685 aa)
     
 
  0.953
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
Server load: low (7%) [HD]