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TRPB protein (Phaeodactylum tricornutum) - STRING interaction network
"TRPB" - Tryptophan synthase, beta chain in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRPBTryptophan synthase, beta chain (385 aa)    
Predicted Functional Partners:
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
     
 
  0.995
Phatr24739
Predicted protein (1594 aa)
     
 
  0.995
Phatr41702
Predicted protein (671 aa)
 
0.980
Phatr11527
Predicted protein (172 aa)
 
  0.957
Phatr17238
Anthranilate synthase (958 aa)
   
 
  0.955
Phatrdraft1682
Anthranilate synthase (927 aa)
   
 
  0.953
Phatr28937
Anthranilate phosphoribosyltransferasePredicted protein (357 aa)
 
  0.887
Phatr14230
Anthranilate phosphoribosyltransferasePredicted protein (357 aa)
 
  0.887
Phatr34747
N-(5’-phosphoribosyl)anthranilate isomerase (297 aa)
 
 
  0.852
Phatr48186
Predicted protein (992 aa)
   
 
  0.850
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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