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Phatr52316 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr52316" - Aspartokinase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr52316Aspartokinase (468 aa)    
Predicted Functional Partners:
Phatr22113
Bifunctional aspartokinase (870 aa)
 
0.980
Phatr48694
Homoserine dehydrogenase (437 aa)
 
  0.937
Phatr26813
Homoserine dehydrogenase (456 aa)
 
  0.928
Phatr10757
Predicted protein (345 aa)
 
 
  0.902
Phatr21592
Diaminopimelate decarboxylase (481 aa)
   
 
  0.879
Phatr18337
Predicted protein (596 aa)
   
 
  0.878
Phatr46461
Predicted protein (426 aa)
   
  0.876
Phatr21116
Argininosuccinate synthase (418 aa)
   
 
  0.871
AAT_2
Aspartate aminotransferase (426 aa)
       
  0.867
AAT_1
Aspartate transaminase (435 aa)
       
  0.867
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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