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STRINGSTRING
Phatr52450 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr52450" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr52450Predicted protein (154 aa)    
Predicted Functional Partners:
Phatr33295
Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle (1186 aa)
     
 
  0.994
Phatr19333
Predicted protein (411 aa)
     
 
  0.993
HAT
Histone acetyltransferase (520 aa)
     
 
  0.987
Phatr42944
Predicted protein (1422 aa)
       
 
  0.976
Phatr10499
Predicted protein; Belongs to the protein kinase superfamily (330 aa)
     
 
  0.972
NURF-55
Chromatin assembly factor subunit c (466 aa)
     
 
  0.962
MCM7
Predicted protein; Belongs to the MCM family (618 aa)
     
 
  0.950
H2A-m1
Histone H2A (138 aa)
     
 
  0.949
Phatr48136
Chromatin assembly factor subunit (1435 aa)
     
 
  0.940
Phatr11409
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (160 aa)
     
 
  0.930
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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