STRINGSTRING
Phatr52603 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr52603" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr52603Predicted protein (597 aa)    
Predicted Functional Partners:
Phatr54703
Udp-n-acetylglucosamine pyrophosphorylase (472 aa)
   
  0.967
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
   
 
  0.744
Phatr12107
Predicted protein (460 aa)
   
 
  0.734
GFA1
Glutamine-fructose-6-phosphate transaminase (606 aa)
   
 
  0.709
Phatr54493
Udp-n-acetylglucosamine diphosphorylase (600 aa)
   
  0.688
Phatr23639
Precursor of phosphorylase udp-glucose diphosphorylase (712 aa)
   
  0.688
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (260 aa)
   
 
  0.673
UGP/PGM
UDP-Glucose-Pyrophosphorylase/Phosphoglucomutase (629 aa)
     
  0.667
PGM_1
Mutase phosphoglucomutase (600 aa)
     
  0.667
Phatr46656
Predicted protein (531 aa)
       
  0.667
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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