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STRINGSTRING
Phatr52678 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr52678" - DNA polymerase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr52678DNA polymerase (2155 aa)    
Predicted Functional Partners:
POLA
DNA polymerase (1147 aa)
     
  0.999
Phatr50274
Predicted protein (574 aa)
     
  0.999
Phatr54677
DNA polymerase (1087 aa)
     
  0.997
Phatr46806
Predicted protein (463 aa)
     
  0.996
Phatr54992
DNA primase; Belongs to the eukaryotic-type primase small subunit family (458 aa)
     
  0.991
Phatr37723
Predicted protein (470 aa)
     
  0.989
MCM4
DNA helicase; Belongs to the MCM family (791 aa)
     
 
  0.982
Phatr19604
Predicted protein (363 aa)
     
 
  0.972
MCM5
Predicted protein; Belongs to the MCM family (667 aa)
     
 
  0.972
TIM_2
Timeless (944 aa)
     
 
  0.971
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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