• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatr52709 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr52709" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr52709Predicted protein (179 aa)    
Predicted Functional Partners:
CYCL1
Predicted protein; Belongs to the cyclin family (193 aa)
     
 
  0.847
Phatr15555
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1706 aa)
     
 
  0.810
Phatr47388
Transcription elongation factor SPT5 (1057 aa)
     
 
  0.759
Phatr13675
Predicted protein; Belongs to the protein kinase superfamily (228 aa)
     
 
  0.636
Phatr42478
Predicted protein (809 aa)
     
 
  0.606
Phatr13834
Predicted protein (172 aa)
     
 
  0.597
Phatr48763
Predicted protein (436 aa)
     
 
  0.575
Phatr27082
Predicted protein (133 aa)
       
 
  0.567
Phatr16875
Predicted protein (164 aa)
     
 
  0.563
Phatr47180
Predicted protein (610 aa)
     
   
  0.555
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
Server load: low (9%) [HD]