• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatr5271 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr5271" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr5271Predicted protein (169 aa)    
Predicted Functional Partners:
PAS2
Ubiquitin carrier protein; Belongs to the ubiquitin-conjugating enzyme family (168 aa)
       
      0.552
Phatr36198
Ubiquitin carrier protein; Belongs to the ubiquitin-conjugating enzyme family (163 aa)
       
      0.552
Phatr30092
Predicted protein; Belongs to the ubiquitin-conjugating enzyme family (147 aa)
       
      0.552
UBC2
Ubiquitin conjugating enzyme E2; Ubiquitin carrier protein; Belongs to the ubiquitin-conjugating enzyme family (147 aa)
       
      0.552
AP3mu
Predicted protein; Belongs to the adaptor complexes medium subunit family (416 aa)
           
  0.481
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
Server load: low (6%) [HD]