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UPL1 protein (Phaeodactylum tricornutum) - STRING interaction network
"UPL1" - Ubiquitin-protein ligase 1 in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UPL1Ubiquitin-protein ligase 1 (166 aa)    
Predicted Functional Partners:
sUbi
Ubiquitin-like protein (268 aa)
       
  0.724
hUbi
Predicted proteinUbiquitin extension protein 4 (381 aa)
       
  0.724
Phatr49037
Predicted protein (205 aa)
       
  0.724
UBI3
Ubiquitin extension protein 3 (155 aa)
       
  0.724
UBC1
Ubiquitin carrier protein (197 aa)
     
  0.702
Phatr16032
Predicted protein (422 aa)
     
  0.679
sUbc6
Predicted protein (118 aa)
       
  0.675
Phatr5608
Ubiquitin carrier protein (161 aa)
       
  0.675
PAS2
Ubiquitin carrier protein (168 aa)
       
  0.675
Phatr36198
Ubiquitin carrier protein (163 aa)
       
  0.675
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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