Rpe protein (Phaeodactylum tricornutum) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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filled nodes:
some 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

Rpe

Ribulose-phosphate 3-epimerase (260 aa)

Predicted Functional Partners:

Tkl

0.898

Phatr29260

0.887

Phatrdraft1682

0.719

Phatr17238

0.719

GltX

0.709

Phatr24739

0.709

PHATR_3140

0.701

Prk

0.693

Phatr13382

0.692

ACL

0.688

Your Current Organism:

Phaeodactylum tricornutum

NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACL	GltX	Phatr54477	Phatr51214	Atp-citrate synthase	Ferredoxin-dependent glutamate synthase, fusion of large and small subunits	0.959
ACL	PHATR_3140	Phatr54477	Phatr3140	Atp-citrate synthase	Predicted protein	0.567
ACL	Phatr13382	Phatr54477	Phatr13382	Atp-citrate synthase	Predicted protein	0.503
ACL	Phatr17238	Phatr54477	Phatr17238	Atp-citrate synthase	Anthranilate synthase	0.722
ACL	Phatr24739	Phatr54477	Phatr24739	Atp-citrate synthase	Predicted protein	0.805
ACL	Phatr29260	Phatr54477	Phatr29260	Atp-citrate synthase	Transketolase	0.502
ACL	Phatrdraft1682	Phatr54477	Phatrdraft1682	Atp-citrate synthase	Anthranilate synthase	0.722
ACL	Rpe	Phatr54477	Phatr53935	Atp-citrate synthase	Ribulose-phosphate 3-epimerase	0.688
ACL	Tkl	Phatr54477	Phatr41856	Atp-citrate synthase	Transketolase	0.502
GltX	ACL	Phatr51214	Phatr54477	Ferredoxin-dependent glutamate synthase, fusion of large and small subunits	Atp-citrate synthase	0.959
GltX	PHATR_3140	Phatr51214	Phatr3140	Ferredoxin-dependent glutamate synthase, fusion of large and small subunits	Predicted protein	0.706
GltX	Phatr17238	Phatr51214	Phatr17238	Ferredoxin-dependent glutamate synthase, fusion of large and small subunits	Anthranilate synthase	0.754
GltX	Phatr24739	Phatr51214	Phatr24739	Ferredoxin-dependent glutamate synthase, fusion of large and small subunits	Predicted protein	0.999
GltX	Phatr29260	Phatr51214	Phatr29260	Ferredoxin-dependent glutamate synthase, fusion of large and small subunits	Transketolase	0.500
GltX	Phatrdraft1682	Phatr51214	Phatrdraft1682	Ferredoxin-dependent glutamate synthase, fusion of large and small subunits	Anthranilate synthase	0.754
GltX	Prk	Phatr51214	Phatr10208	Ferredoxin-dependent glutamate synthase, fusion of large and small subunits	Phosphoribulokinase	0.418
GltX	Rpe	Phatr51214	Phatr53935	Ferredoxin-dependent glutamate synthase, fusion of large and small subunits	Ribulose-phosphate 3-epimerase	0.709
GltX	Tkl	Phatr51214	Phatr41856	Ferredoxin-dependent glutamate synthase, fusion of large and small subunits	Transketolase	0.500
PHATR_3140	ACL	Phatr3140	Phatr54477	Predicted protein	Atp-citrate synthase	0.567
PHATR_3140	GltX	Phatr3140	Phatr51214	Predicted protein	Ferredoxin-dependent glutamate synthase, fusion of large and small subunits	0.706

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