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STRINGSTRING
Rpe protein (Phaeodactylum tricornutum) - STRING interaction network
"Rpe" - Ribulose-phosphate 3-epimerase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RpeRibulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family (260 aa)    
Predicted Functional Partners:
Tkl
Transketolase (664 aa)
 
  0.857
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family (614 aa)
   
   
  0.836
Phatr29260
Transketolase (684 aa)
 
  0.835
Phatr13382
Predicted protein (244 aa)
   
 
  0.727
FbaC5
Fructose-bisphosphate aldolase (358 aa)
      
 
  0.647
Phatr30145
Citrate synthase; Belongs to the citrate synthase family (471 aa)
   
   
  0.610
Phatr31147
Probable methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1- phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1- phosphate (DK-MTP-1-P) (559 aa)
         
  0.591
Phatr28222
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway (316 aa)
   
 
  0.586
TAL
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway (348 aa)
   
 
  0.586
MDH
Predicted protein; Belongs to the LDH/MDH superfamily (324 aa)
      
   
  0.584
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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