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SHMT2 protein (Phaeodactylum tricornutum) - STRING interaction network
"SHMT2" - Serine hydroxymethyltransferase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHMT2Serine hydroxymethyltransferase; Interconversion of serine and glycine (501 aa)    
Predicted Functional Partners:
GDCP
Glycine decarboxylase p-protein (1005 aa)
   
 
  0.994
Phatr23429
Predicted protein (615 aa)
   
  0.986
GDCT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine (421 aa)
 
  0.984
METH
Methionine synthase (1245 aa)
       
  0.983
Phatr47067
Predicted protein (1237 aa)
   
   
  0.983
Phatr1690
Predicted protein (495 aa)
   
  0.982
Phatr4402
Predicted protein (274 aa)
   
  0.981
GDCH
Glycine decarboxylase (157 aa)
   
 
  0.975
Phatr30471
Methylenetetrahydrofolate reductase (376 aa)
   
 
  0.958
Phatr28431
Methylenetetrahydrofolate reductase (634 aa)
   
 
  0.958
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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