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STRINGSTRING
AP3delta protein (Phaeodactylum tricornutum) - STRING interaction network
"AP3delta" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AP3deltaPredicted protein (1277 aa)    
Predicted Functional Partners:
Phatr54789
AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family (1205 aa)
     
 
  0.987
AP3mu
Predicted protein; Belongs to the adaptor complexes medium subunit family (416 aa)
     
 
  0.974
AP3sigma
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family (150 aa)
     
 
  0.969
Phatr42975
Predicted protein; Belongs to the STXBP/unc-18/SEC1 family (689 aa)
     
 
  0.830
Phatr50326
Predicted protein (998 aa)
     
   
  0.773
COPbeta
Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (978 aa)
     
 
  0.741
AP2sigma
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family (152 aa)
     
 
  0.722
CHC
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (1702 aa)
     
 
  0.703
Phatr26387
Predicted protein (1053 aa)
     
   
  0.675
Rab6
Predicted protein (236 aa)
     
 
  0.654
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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