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Phatr54051 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr54051" - Pds-like2, phytoene desaturase-like protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr54051Pds-like2, phytoene desaturase-like protein (605 aa)    
Predicted Functional Partners:
CRTISO2
Carotenoid isomerase (635 aa)
 
   
  0.663
CRTISO1
Carotenoid isomerase (633 aa)
 
   
  0.660
Phatr48985
Predicted protein (2198 aa)
   
 
  0.652
PSY
Phytoene synthase (309 aa)
   
 
  0.652
Phatr33756
Predicted protein (711 aa)
   
 
  0.652
Phatr13160
Predicted protein (314 aa)
   
 
  0.652
CRTISO4
Carotenoid isomerase (598 aa)
 
   
  0.646
CRTISO3
Carotenoid isomerase (595 aa)
 
   
  0.642
CRTISO5
CRTISO5 carotenoid isomerase 5,phytoene dehydrogenase-related protein (530 aa)
 
   
  0.633
Phatr5617
Predicted protein (239 aa)
   
          0.501
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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