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STRINGSTRING
SybE protein (Phaeodactylum tricornutum) - STRING interaction network
"SybE" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SybEPredicted protein; Belongs to the synaptobrevin family (227 aa)    
Predicted Functional Partners:
Memb11
Predicted protein (205 aa)
     
  0.997
Phatr13691
Predicted protein (121 aa)
     
  0.995
Phatr9033
annotation not available (268 aa)
     
  0.982
SLY1
Predicted protein; Belongs to the STXBP/unc-18/SEC1 family (648 aa)
     
 
  0.972
GOS
Predicted protein (223 aa)
     
 
  0.968
Phatr40521
Predicted protein (203 aa)
     
 
  0.964
Phatr13396
Predicted protein (680 aa)
     
 
  0.960
Phatr31559
Predicted protein (297 aa)
     
 
  0.960
SNAP
Predicted protein (313 aa)
     
 
  0.930
Phatr48149
Predicted protein (380 aa)
     
 
  0.916
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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