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ME1 protein (Phaeodactylum tricornutum) - STRING interaction network
"ME1" - Malic enzyme in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ME1Malic enzyme (560 aa)    
Predicted Functional Partners:
FUM1
Precursor of fumarase fumarase (567 aa)
       
  0.986
MDH
Predicted protein (324 aa)
   
  0.975
PK6
Pyruvate kinase (553 aa)
   
  0.963
PK3
Pyruvate kinase (543 aa)
   
  0.963
PK2
Pyruvate kinase (513 aa)
   
  0.963
PK5
Pyruvate kinase (543 aa)
   
  0.963
PPdK
Predicted protein (1011 aa)
       
  0.963
Fum
Fumarate hydratase (462 aa)
   
  0.963
MS
Malate synthase (553 aa)
       
  0.950
PDHA1
Precursor of dehydrogenase pyruvate dehydrogenase E1 component alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) (413 aa)
     
 
  0.949
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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