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atpB protein (Phaeodactylum tricornutum) - STRING interaction network
"atpB" - ATP synthase subunit beta in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atpBATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane (501 aa)    
Predicted Functional Partners:
Phatr44603
Predicted protein (220 aa)
   
 
  0.999
AtpC
Precursor of ATPase ATPase gamma subunit; ATP synthase gamma chain, chloroplastic (369 aa)
 
 
  0.990
Phatr18398
Predicted protein; ATP synthase gamma chain (305 aa)
 
 
  0.983
Phatr26515
Predicted protein (272 aa)
     
   
  0.981
Phatr31465
Predicted protein (679 aa)
   
 
  0.971
TufA
Predicted protein; Elongation factor Tu (426 aa)
   
   
  0.969
Phatr20787
Predicted protein; Belongs to the peptidase M16 family (473 aa)
     
 
  0.948
Phatr43944
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain (493 aa)
     
   
  0.944
Atp1
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane (509 aa)
 
 
0.940
MDH
Predicted protein; Belongs to the LDH/MDH superfamily (324 aa)
   
 
  0.933
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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