STRINGSTRING
Phatr54121 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr54121" - Sex comb extra in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr54121Sex comb extra (411 aa)    
Predicted Functional Partners:
PAS2
Ubiquitin carrier protein (168 aa)
     
    0.744
Phatr36198
Ubiquitin carrier protein (163 aa)
     
    0.744
Phatr30092
Predicted protein (147 aa)
     
    0.744
UBC2
Ubiquitin carrier protein (147 aa)
     
    0.744
Phatr27762
Ubiquitin carrier protein (160 aa)
     
    0.674
Phatr28433
Ubiquitin carrier protein (167 aa)
     
    0.667
Phatr10724
Predicted protein (169 aa)
       
  0.663
Phatr5608
Ubiquitin carrier protein (161 aa)
       
  0.662
Phatr26750
Ubiquitin carrier protein (153 aa)
       
  0.658
sUbc6
Predicted protein (118 aa)
       
    0.657
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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