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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
hBRM protein (Phaeodactylum tricornutum) - STRING interaction network
"hBRM" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hBRMPredicted protein (995 aa)    
Predicted Functional Partners:
Phatr54092
Chromatin remodeling-related protein (674 aa)
     
 
  0.993
Phatr43759
Predicted protein (462 aa)
     
 
  0.916
Phatr47879
Predicted protein (1958 aa)
     
 
  0.904
Phatr10199
Predicted protein (203 aa)
     
 
  0.895
Phatr45153
Predicted protein; Belongs to the actin family (523 aa)
     
 
  0.860
ARP
Actin related protein; Belongs to the actin family (463 aa)
     
 
  0.860
H2A-m1
Histone H2A (138 aa)
     
 
  0.854
Phatr7961
Predicted protein (59 aa)
     
 
  0.835
Phatr45934
Predicted protein (627 aa)
     
 
  0.817
Phatr16875
Predicted protein (164 aa)
     
 
  0.763
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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