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Phatr54164 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr54164" - Bacterial type voltage activated sodium channel in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr54164Bacterial type voltage activated sodium channel (415 aa)    
Predicted Functional Partners:
CBP
Calcium binding protein (132 aa)
       
  0.941
CaM2
Calmodulin (154 aa)
       
  0.941
CaM1
Calmoduline (149 aa)
       
  0.941
Phatr21744
Predicted protein (149 aa)
       
  0.941
CATR1
Caltractin (151 aa)
       
  0.687
CATR2
Caltractin (192 aa)
       
  0.687
Phatr49216
Predicted protein (694 aa)
         
  0.502
Phatr49215
Predicted protein (582 aa)
         
  0.502
Phatr47992
Predicted protein (432 aa)
     
 
  0.454
Phatr49777
Predicted protein (418 aa)
       
  0.428
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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