STRINGSTRING
Phatr54168 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr54168" - Annotation not available in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr54168Annotation not available (509 aa)    
Predicted Functional Partners:
Phatr9724
Predicted protein (371 aa)
   
 
  0.677
Phatr42361
Predicted protein (380 aa)
     
 
  0.571
Phatr14995
Predicted protein (316 aa)
     
 
  0.571
Phatr14426
Predicted protein (288 aa)
     
 
  0.571
Phatr15884
Predicted protein (290 aa)
         
  0.533
ACL
Atp-citrate synthase (1082 aa)
         
  0.459
Phatr12107
Predicted protein (460 aa)
         
  0.446
ACC2
Biotin carboxylase (2282 aa)
     
 
  0.440
Phatr1690
Predicted protein (495 aa)
         
  0.439
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
           
  0.429
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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