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Phatr54222 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr54222" - Ornithine cyclodeaminase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr54222Ornithine cyclodeaminase (346 aa)    
Predicted Functional Partners:
Phatr40880
Agmatinase (416 aa)
       
  0.616
Phatr38509
Predicted protein (301 aa)
       
  0.613
Phatr34775
Predicted protein (346 aa)
   
          0.526
ODC3
Ornithine decarboxylase (564 aa)
   
   
  0.489
Phatr13158
Predicted protein (114 aa)
     
      0.483
OAT
Ornithine aminotransferase (448 aa)
         
  0.483
GDCT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine (421 aa)
           
  0.427
GDCT_1
Glycine decarboxylase t-protein (892 aa)
           
  0.424
Phatr24238
Carbamate kinase (336 aa)
           
  0.420
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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