STRINGSTRING
Phatr5424 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr5424" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr5424Predicted protein (154 aa)    
Predicted Functional Partners:
Phatr45441
Predicted protein; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (379 aa)
     
      0.959
Phatr44687
Predicted protein (426 aa)
     
 
  0.914
Phatr49433
Predicted protein (705 aa)
     
 
  0.895
Phatr30960
Predicted protein (313 aa)
     
        0.875
Phatr51897
Predicted protein (531 aa)
     
      0.870
Phatr32646
Predicted protein (268 aa)
     
      0.844
Phatr44555
Predicted protein (743 aa)
     
        0.812
Phatr51007
Predicted protein (296 aa)
     
        0.802
Phatr21538
Predicted protein; Involved in nucleolar processing of pre-18S ribosomal RNA (256 aa)
     
        0.799
Phatr36927
Predicted protein (409 aa)
     
        0.798
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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