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STRINGSTRING
Phatr5424 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr5424" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr5424Predicted protein (154 aa)    
Predicted Functional Partners:
Phatr49433
Predicted protein (705 aa)
     
 
  0.986
Phatr9893
Predicted protein; Belongs to the DEAD box helicase family (455 aa)
     
 
  0.983
Phatr44687
Predicted protein (426 aa)
     
 
  0.980
Phatr13235
RNA helicase; Glycine decarboxylase T-protein, aminomethyl transferase, GDCT, GCST, GCVT (512 aa)
     
 
  0.971
Phatr45871
Predicted protein (944 aa)
     
 
  0.966
Phatr45441
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (379 aa)
     
 
  0.954
Phatr25666
Predicted protein (885 aa)
     
 
  0.949
Phatr51897
Predicted protein (531 aa)
     
 
  0.939
Phatr50246
Predicted protein (823 aa)
     
   
  0.928
Phatr17974
Predicted protein (475 aa)
     
   
  0.908
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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