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STRINGSTRING
TFIIH-p44 protein (Phaeodactylum tricornutum) - STRING interaction network
"TFIIH-p44" - Suppressor of stem-loop protein 1 in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TFIIH-p44Suppressor of stem-loop protein 1 (413 aa)    
Predicted Functional Partners:
ERCC2
Xeroderma pigmentosum group D complementing protein (782 aa)
     
 
  0.994
Phatr44108
Predicted protein (358 aa)
     
 
  0.993
Phatr20574
Predicted protein (720 aa)
     
 
  0.992
Phatr43960
Predicted protein (641 aa)
     
 
  0.992
MAT1
Predicted protein (294 aa)
     
 
  0.990
Phatr48763
Predicted protein (436 aa)
     
 
  0.890
Phatr50377
Predicted protein (755 aa)
     
 
  0.847
RAD4
Xeroderma pigmentosum group (857 aa)
     
   
  0.840
Phatr13221
Predicted protein (208 aa)
     
   
  0.825
Phatr38848
Predicted protein (552 aa)
     
 
  0.808
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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