• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatr54355 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr54355" - Carboxylyase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr54355Carboxylyase; Belongs to the TPP enzyme family (667 aa)    
Predicted Functional Partners:
Phatr20547
Homeobox protein (646 aa)
 
  0.942
IPMDH
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate (416 aa)
 
  0.835
Phatrdraft348
Predicted protein (521 aa)
 
   
  0.818
Phatr30967
Predicted protein (539 aa)
 
   
  0.818
TDH
L-threonine ammonia-lyase (606 aa)
   
 
  0.764
Phatr41702
Predicted protein (671 aa)
   
 
  0.740
Phatr30514
Predicted protein; Belongs to the ATCase/OTCase family (351 aa)
   
   
  0.705
Phatr44618
2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family (663 aa)
 
   
  0.668
Phatr24772
Predicted protein (801 aa)
 
   
  0.630
Phatr16499
Predicted protein (378 aa)
   
   
  0.605
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
Server load: low (8%) [HD]