STRINGSTRING
Phatr54355 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr54355" - Carboxylyase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr54355Carboxylyase (667 aa)    
Predicted Functional Partners:
Phatr20547
Homeobox protein (646 aa)
 
 
  0.871
IPMDH
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate (416 aa)
 
  0.869
Phatrdraft348
Predicted protein (521 aa)
 
 
  0.840
Phatr30967
Predicted protein (539 aa)
 
 
  0.839
Phatr24772
Predicted protein (801 aa)
   
   
  0.780
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
   
 
  0.775
Phatr24739
Predicted protein (1594 aa)
   
 
  0.775
Phatrdraft1517
Predicted protein (129 aa)
   
  0.738
Phatr50806
Predicted protein (588 aa)
   
  0.738
Phatr43697
Branched-chain-amino-acid aminotransferase (356 aa)
   
  0.738
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (12%) [HD]