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LKRSDH protein (Phaeodactylum tricornutum) - STRING interaction network
"LKRSDH" - Saccharopine dehydrogenase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LKRSDHSaccharopine dehydrogenase (682 aa)    
Predicted Functional Partners:
Phatr21592
Diaminopimelate decarboxylase (481 aa)
       
  0.912
Phatr21868
Predicted protein (186 aa)
     
      0.609
ODC3
Ornithine decarboxylase (564 aa)
       
  0.580
Phatr2834
Predicted protein (392 aa)
       
  0.580
ODC2
Ornithine decarboxylase (390 aa)
       
  0.580
Phatr41409
Predicted protein (1506 aa)
         
  0.578
Phatr32292
Predicted protein (502 aa)
         
  0.578
NRPS
Non ribosomal peptide synthase (1367 aa)
   
   
  0.552
Phatr31906
Aldehyde dehydrogenase (551 aa)
   
 
  0.527
Phatr20445
Predicted protein (524 aa)
   
 
  0.527
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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