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LKRSDH protein (Phaeodactylum tricornutum) - STRING interaction network
"LKRSDH" - Saccharopine dehydrogenase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LKRSDHSaccharopine dehydrogenase (682 aa)    
Predicted Functional Partners:
NRPS
Non ribosomal peptide synthase (1367 aa)
   
   
  0.854
Phatr21592
Diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family (481 aa)
       
  0.833
Phatr49500
Predicted protein (1011 aa)
   
   
  0.817
DHLTA_4
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; Dihydrolipoamide acetyl transferase (525 aa)
     
   
  0.805
P5CS
Delta-1-pyrroline-5-carboxylate synthase; Delta l-pyrroline-5-carboxylate synthetase; In the C-terminal section; belongs to the gamma- glutamyl phosphate reductase family (747 aa)
     
   
  0.713
Phatr18027
Predicted protein (706 aa)
     
   
  0.713
Phatr52316
Aspartokinase; Belongs to the aspartokinase family (468 aa)
   
   
  0.711
Phatr44618
2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family (663 aa)
     
   
  0.653
Phatr38362
2-isopropylmalate synthase (581 aa)
     
   
  0.653
Phatr12269
Predicted protein (300 aa)
     
   
  0.634
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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