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STRINGSTRING
Phatr54417 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr54417" - Cohesin in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr54417Cohesin (1455 aa)    
Predicted Functional Partners:
Phatr44595
Mitotic cohesin (663 aa)
     
 
  0.997
SMC1
Predicted protein (1237 aa)
     
 
  0.993
Phatrdraft1590
Predicted protein (958 aa)
     
 
  0.990
SMC3
Predicted protein (1232 aa)
     
 
  0.990
Phatr50138
Sister chromatid cohesion protein (1699 aa)
     
 
  0.981
Phatr44165
Structural maintenance of chromosomes protein (1356 aa)
     
 
  0.974
Phatr48451
Separase protein (2039 aa)
     
 
  0.962
SMC2
Structural maintenance of chromosomes protein (1213 aa)
     
 
  0.955
SMC5
Predicted protein (1099 aa)
     
 
  0.952
Phatr43362
Predicted protein (398 aa)
     
 
  0.939
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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