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Sar1a protein (Phaeodactylum tricornutum) - STRING interaction network
"Sar1a" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sar1aPredicted protein; Belongs to the small GTPase superfamily. SAR1 family (192 aa)    
Predicted Functional Partners:
Phatr47010
Predicted protein (1133 aa)
     
  0.979
Sec13
Predicted protein; Belongs to the WD repeat SEC13 family (330 aa)
     
  0.956
Phatr13396
Predicted protein (680 aa)
     
 
  0.880
Phatr48220
Predicted protein (1041 aa)
     
 
  0.826
Phatr49065
Predicted protein (2083 aa)
       
 
  0.784
COPgamma
Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (910 aa)
     
   
  0.782
SybE
Predicted protein; Belongs to the synaptobrevin family (227 aa)
     
 
  0.751
Phatr47270
Predicted protein (897 aa)
     
 
  0.734
Sec23
Predicted protein (759 aa)
     
 
  0.734
Phatr13691
Predicted protein (121 aa)
     
 
  0.728
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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