STRINGSTRING
Phatr54476 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr54476" - Formidase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr54476Formidase (451 aa)    
Predicted Functional Partners:
Phatr51092
Glutamine synthetase (416 aa)
       
    0.900
Phatr45239
Predicted protein (1097 aa)
         
    0.900
Phatr24195
CPS III, carbamoyl-phosphate synthase mitochindrial (1463 aa)
         
    0.900
GLNA
GLNA, glutamine synthase (716 aa)
         
    0.900
Phatr13951
Predicted protein (450 aa)
         
    0.900
Phatr12902
Predicted protein (536 aa)
         
    0.900
ME1
Malic enzyme (560 aa)
       
    0.802
Phatr51970
Malic enzyme (555 aa)
       
    0.802
MS
Malate synthase (553 aa)
         
    0.800
PEPCase_2
Predicted protein (877 aa)
         
    0.800
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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