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STRINGSTRING
Phatr54476 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr54476" - Formidase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr54476Formidase (451 aa)    
Predicted Functional Partners:
Phatr51092
Glutamine synthetase (416 aa)
       
  0.915
Phatr12902
Predicted protein (536 aa)
         
  0.911
Phatr45239
Predicted protein (1097 aa)
       
    0.901
Phatr13951
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family (450 aa)
       
    0.901
Phatr24195
CPS III, carbamoyl-phosphate synthase mitochindrial (1463 aa)
         
    0.900
GLNA
GLNA, glutamine synthase; Belongs to the glutamine synthetase family (716 aa)
         
    0.900
MDH
Predicted protein; Belongs to the LDH/MDH superfamily (324 aa)
     
 
  0.811
Fum
Fumarate hydratase (462 aa)
     
 
    0.800
MS
Malate synthase; Belongs to the malate synthase family (553 aa)
         
    0.800
ME1
Predicted protein; Malic enzyme (560 aa)
         
    0.800
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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