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STRINGSTRING
MS protein (Phaeodactylum tricornutum) - STRING interaction network
"MS" - Malate synthase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MSMalate synthase; Belongs to the malate synthase family (553 aa)    
Predicted Functional Partners:
Phatr14401
Isocitrate lyase; Belongs to the isocitrate lyase/PEP mutase superfamily. Isocitrate lyase family (539 aa)
 
  0.999
Phatr30145
Citrate synthase; Belongs to the citrate synthase family (471 aa)
   
 
  0.990
PEPCK1
Phosphoenolpyruvate carboxykinase (612 aa)
   
   
  0.981
MDH
Predicted protein; Belongs to the LDH/MDH superfamily (324 aa)
     
 
  0.981
Phatrdraft645
Acetyl-coenzyme A synthetase (732 aa)
     
  0.978
Phatr22974
Acetyl-coenzyme A synthetase; Acetate-coa, ligase (675 aa)
     
  0.978
Fum
Fumarate hydratase (462 aa)
   
 
  0.977
Phatr51970
Malic enzyme (555 aa)
   
 
  0.952
ME1
Predicted protein; Malic enzyme (560 aa)
   
 
  0.952
GOX
Glycolate oxidase (381 aa)
   
 
  0.925
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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