STRINGSTRING
MS protein (Phaeodactylum tricornutum) - STRING interaction network
"MS" - Malate synthase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MSMalate synthase (553 aa)    
Predicted Functional Partners:
Phatr14401
Isocitrate lyase (539 aa)
 
  0.999
Phatrdraft645
Acetyl-coenzyme A synthetase (732 aa)
     
  0.968
Phatr22974
Acetate-coa, ligase (675 aa)
     
  0.968
Phatr51970
Malic enzyme (555 aa)
       
  0.957
MDH
Predicted protein (324 aa)
     
 
  0.956
ACC1
Acetyl-coa carboxylase (2092 aa)
   
 
  0.954
Phatr30145
Citrate synthase (471 aa)
   
 
  0.953
ME1
Malic enzyme (560 aa)
       
  0.950
ACC2
Biotin carboxylase (2282 aa)
   
 
  0.947
FUM1
Precursor of fumarase fumarase (567 aa)
         
  0.933
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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