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MMSDH protein (Phaeodactylum tricornutum) - STRING interaction network
"MMSDH" - Methylmalonate semialdhyde dehydrogenase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMSDHMethylmalonate semialdhyde dehydrogenase (530 aa)    
Predicted Functional Partners:
Phatr45141
Oxidoreductase (332 aa)
   
  0.613
Phatr17487
Oxidoreductase (316 aa)
   
  0.613
Phatr11318
Predicted protein (324 aa)
   
  0.613
FAO1
Peroxisomal bifunctional enzyme (767 aa)
     
 
  0.606
Phatr35240
Predicted protein (684 aa)
     
 
  0.606
Phatr51869
Myo-inositol 2-dehydrogenase (301 aa)
         
  0.553
GAPN
Glyceraldehyde-3-phosphate dehydrogenase (588 aa)
   
0.551
UGP/PGM
UDP-Glucose-Pyrophosphorylase/Phosphoglucomutase (629 aa)
     
   
  0.506
Phatr41645
Predicted protein (166 aa)
       
      0.501
Phatr16540
Aldehyde dehydrogenase (432 aa)
   
0.497
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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