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MMSDH protein (Phaeodactylum tricornutum) - STRING interaction network
"MMSDH" - Methylmalonate semialdhyde dehydrogenase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMSDHMethylmalonate semialdhyde dehydrogenase (530 aa)    
Predicted Functional Partners:
P5CS
Delta-1-pyrroline-5-carboxylate synthase; Delta l-pyrroline-5-carboxylate synthetase; In the C-terminal section; belongs to the gamma- glutamyl phosphate reductase family (747 aa)
           
  0.910
Phatr18027
Predicted protein (706 aa)
           
  0.910
Phatr54528
3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family (385 aa)
     
 
  0.779
Phatr45141
Oxidoreductase (332 aa)
     
 
  0.587
Phatr17487
Oxidoreductase (316 aa)
     
 
  0.587
Phatr11318
Predicted protein (324 aa)
     
 
  0.587
Phatr51869
Myo-inositol 2-dehydrogenase (301 aa)
     
   
  0.560
Phatr19659
Iron-containing dehydrogenase (465 aa)
 
 
   
  0.558
GAPN
Glyceraldehyde-3-phosphate dehydrogenase (588 aa)
   
 
0.505
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family (614 aa)
     
 
  0.460
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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