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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatr54536 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr54536" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr54536Predicted protein (859 aa)    
Predicted Functional Partners:
Phatr44482
Predicted protein (600 aa)
           
  0.910
Phatr22677
Dihydroderamide delta-4 desaturase (321 aa)
         
  0.902
Phatr20082
Predicted protein (716 aa)
         
    0.900
Phatr14561
Predicted protein; Belongs to the BI1 family (172 aa)
           
  0.797
Phatr46924
Predicted protein; Belongs to the calycin superfamily. Lipocalin family (189 aa)
           
  0.692
Phatr44391
Predicted protein (486 aa)
 
     
  0.678
Phatr54983
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (891 aa)
           
  0.646
Phatr45673
Beta-galactosidase (951 aa)
   
   
  0.577
Phatr32791
Predicted protein (191 aa)
     
   
  0.574
Phatr3832
Predicted protein (349 aa)
   
   
  0.553
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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