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STRINGSTRING
Phatr54577 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr54577" - Helicase_2 in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr54577Helicase_2 (790 aa)    
Predicted Functional Partners:
Phatr14032
Predicted protein; Belongs to the DEAD box helicase family (467 aa)
     
 
  0.659
Phatr16987
Predicted protein; Belongs to the DEAD box helicase family (404 aa)
     
 
  0.650
Phatr2097
Predicted protein; Belongs to the DEAD box helicase family (552 aa)
     
 
  0.639
Phatr17408
Predicted protein (1303 aa)
     
 
  0.521
Phatr25549
Predicted protein (512 aa)
     
 
  0.501
Phatr14161
Helicase_3 (540 aa)
     
 
  0.490
Phatr13235
RNA helicase; Glycine decarboxylase T-protein, aminomethyl transferase, GDCT, GCST, GCVT (512 aa)
     
 
  0.486
Phatr43905
Predicted protein (1038 aa)
     
 
  0.484
Phatr45727
Predicted protein (948 aa)
     
 
  0.479
Phatr9989
Predicted protein; Belongs to the DEAD box helicase family (620 aa)
     
 
  0.479
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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