STRINGSTRING
Phatr54612 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr54612" - Ercc4-like protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr54612Ercc4-like protein (736 aa)    
Predicted Functional Partners:
Phatr13221
Predicted protein (208 aa)
     
  0.944
Rad22
Predicted protein (468 aa)
       
  0.865
Phatr9529
Predicted protein (348 aa)
     
  0.855
Phatr47369
Predicted protein (1496 aa)
     
  0.855
PHATR_2089
Predicted protein (449 aa)
     
  0.855
Phatr18280
Predicted protein (504 aa)
     
  0.855
Phatr14845
Predicted protein (440 aa)
     
  0.855
Phatr38848
Predicted protein (552 aa)
     
  0.852
XPF
Excision repair cross-complementing rodent repair deficiency, complementation group 4 (975 aa)
     
  0.834
Phatr47619
Predicted protein (1565 aa)
     
  0.800
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (11%) [HD]