STRINGSTRING
sDer1-1 protein (Phaeodactylum tricornutum) - STRING interaction network
"sDer1-1" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sDer1-1Predicted protein; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (163 aa)    
Predicted Functional Partners:
hCdc48
Predicted protein (800 aa)
       
  0.920
sCdc48
Predicted protein (797 aa)
       
  0.920
hHrd1
Predicted protein (632 aa)
     
  0.855
Phatr47933
Predicted protein (848 aa)
     
  0.855
Phatr48662
Predicted protein (998 aa)
       
  0.845
Phatr8950
Predicted protein (252 aa)
       
  0.845
Phatr8754
Predicted protein (165 aa)
       
  0.845
Phatr55229
Predicted protein (379 aa)
       
  0.845
Phatr4937
Predicted protein (217 aa)
       
  0.845
Phatr42434
Predicted protein (484 aa)
       
  0.845
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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