Phatr5467 protein (Phaeodactylum tricornutum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

Phatr5467

Predicted protein (190 aa)

Predicted Functional Partners:

Phatr29967

0.833

Phatr21667

0.774

Phatr48647

0.720

Phatr44818

0.642

Phatr42712

0.638

Phatr24186

0.599

Phatr13520

0.578

Phatr45915

0.559

Phatr23582

0.559

Phatr46132

0.539

Your Current Organism:

Phaeodactylum tricornutum

NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Phatr13520	Phatr24186	Nuclear cap-binding protein subunit 2	Predicted protein	0.798
Phatr13520	Phatr29967	Nuclear cap-binding protein subunit 2	Predicted protein	0.599
Phatr13520	Phatr5467	Nuclear cap-binding protein subunit 2	Predicted protein	0.578
Phatr21667	Phatr23582	Predicted protein	Predicted protein	0.757
Phatr21667	Phatr24186	Predicted protein	Predicted protein	0.920
Phatr21667	Phatr29967	Predicted protein	Predicted protein	0.925
Phatr21667	Phatr42712	Predicted protein	Predicted protein	0.724
Phatr21667	Phatr45915	Predicted protein	Predicted protein	0.757
Phatr21667	Phatr46132	Predicted protein	Predicted protein	0.864
Phatr21667	Phatr48647	Predicted protein	Predicted protein	0.647
Phatr21667	Phatr5467	Predicted protein	Predicted protein	0.774
Phatr23582	Phatr21667	Predicted protein	Predicted protein	0.757
Phatr23582	Phatr24186	Predicted protein	Predicted protein	0.618
Phatr23582	Phatr29967	Predicted protein	Predicted protein	0.825
Phatr23582	Phatr42712	Predicted protein	Predicted protein	0.419
Phatr23582	Phatr44818	Predicted protein	Predicted protein	0.680
Phatr23582	Phatr46132	Predicted protein	Predicted protein	0.865
Phatr23582	Phatr48647	Predicted protein	Predicted protein	0.435
Phatr23582	Phatr5467	Predicted protein	Predicted protein	0.559
Phatr24186	Phatr13520	Predicted protein	Nuclear cap-binding protein subunit 2	0.798

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