STRINGSTRING
Phatr5467 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr5467" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr5467Predicted protein (190 aa)    
Predicted Functional Partners:
Phatr29967
Predicted protein (871 aa)
     
  0.949
Phatr42712
Predicted protein (219 aa)
     
  0.893
Phatr45915
Predicted protein (1242 aa)
     
 
  0.865
Phatr21667
Predicted protein (976 aa)
     
 
  0.822
Ran1
Predicted protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (213 aa)
     
  0.776
Ran2
Predicted protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (254 aa)
     
  0.776
Phatr23582
Predicted protein (764 aa)
       
 
  0.757
Phatr43752
Predicted protein (2360 aa)
       
  0.744
Phatr49765
Predicted protein (1283 aa)
       
 
  0.707
Phatr44818
Predicted protein (762 aa)
       
 
  0.707
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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