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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatr5467 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr5467" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr5467Predicted protein (190 aa)    
Predicted Functional Partners:
Phatr29967
Predicted protein (871 aa)
     
 
  0.833
Phatr21667
Predicted protein (976 aa)
     
 
  0.774
Phatr48647
Predicted protein (636 aa)
       
 
  0.720
Phatr44818
Predicted protein (762 aa)
     
 
  0.642
Phatr42712
Predicted protein (219 aa)
     
 
  0.638
Phatr24186
Predicted protein (1088 aa)
     
 
  0.599
Phatr13520
Nuclear cap-binding protein subunit 2 (127 aa)
     
 
  0.578
Phatr45915
Predicted protein (1242 aa)
     
 
  0.559
Phatr23582
Predicted protein (764 aa)
     
 
  0.559
Phatr46132
Predicted protein (1007 aa)
     
   
  0.539
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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