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MRE11 protein (Phaeodactylum tricornutum) - STRING interaction network
"MRE11" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MRE11Predicted protein (550 aa)    
Predicted Functional Partners:
RAD50
RAD50 recombination protein (1436 aa)
   
  0.997
Phatr44708
Predicted protein (790 aa)
     
  0.945
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a [...] (421 aa)
   
  0.936
Phatr45914
Predicted protein (746 aa)
     
  0.930
Phatr33013
Predicted protein (571 aa)
     
  0.876
Phatr46971
Predicted protein (696 aa)
   
  0.875
Phatr48206
Predicted protein (794 aa)
   
  0.866
Phatr46734
Predicted protein (894 aa)
   
  0.866
Phatr51040
Predicted protein (607 aa)
     
  0.837
Phatr9529
Predicted protein (348 aa)
   
  0.835
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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