STRINGSTRING
AP4sigma protein (Phaeodactylum tricornutum) - STRING interaction network
"AP4sigma" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AP4sigmaPredicted protein (157 aa)    
Predicted Functional Partners:
Phatr16891
Predicted protein (450 aa)
     
  0.943
Phatr13511
Predicted protein (939 aa)
     
  0.943
Phatrdraft1735
Predicted protein (890 aa)
     
  0.920
AP4beta
Predicted protein (805 aa)
     
  0.920
AP1mu
Predicted protein (439 aa)
     
  0.889
AP4mu
Predicted protein (470 aa)
     
  0.889
AP1alpha
Predicted protein (1019 aa)
     
  0.834
AP2mu
Predicted protein (425 aa)
     
  0.774
COPbeta
Predicted protein; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (978 aa)
     
  0.765
Phatr54789
Predicted protein (1205 aa)
       
  0.755
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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