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AP4sigma protein (Phaeodactylum tricornutum) - STRING interaction network
"AP4sigma" - AP complex subunit sigma in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AP4sigmaAP complex subunit sigma; Belongs to the adaptor complexes small subunit family (157 aa)    
Predicted Functional Partners:
Arf1
Predicted protein; Belongs to the small GTPase superfamily. Arf family (184 aa)
     
 
  0.743
Phatr16891
Predicted protein (450 aa)
     
 
  0.743
Phatr13511
Predicted protein (939 aa)
     
 
  0.743
Phatrdraft1735
Predicted protein (890 aa)
     
 
  0.688
AP4beta
Predicted protein (805 aa)
     
 
  0.688
AP1mu
Predicted protein; Belongs to the adaptor complexes medium subunit family (439 aa)
     
 
  0.654
AP4mu
Predicted protein; Belongs to the adaptor complexes medium subunit family (470 aa)
     
 
  0.654
AP2mu
Predicted protein; Belongs to the adaptor complexes medium subunit family (425 aa)
     
 
  0.631
Phatr48611
Predicted protein (1296 aa)
           
  0.414
Sec13
Predicted protein; Belongs to the WD repeat SEC13 family (330 aa)
           
  0.405
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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