STRINGSTRING
AP4beta protein (Phaeodactylum tricornutum) - STRING interaction network
"AP4beta" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AP4betaPredicted protein (805 aa)    
Predicted Functional Partners:
AP1alpha
Predicted protein (1019 aa)
     
  0.980
AP2sigma
Predicted protein (152 aa)
       
  0.975
AP1mu
Predicted protein (439 aa)
     
  0.969
AP4mu
Predicted protein (470 aa)
     
  0.969
Phatr16891
Predicted protein (450 aa)
     
  0.945
Phatr13511
Predicted protein (939 aa)
     
  0.945
AP4sigma
Predicted protein (157 aa)
     
  0.920
AP1sigma
Predicted protein (202 aa)
     
  0.920
Arf1
Predicted protein (184 aa)
       
  0.884
Phatr46154
Predicted protein (719 aa)
     
  0.881
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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