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TIM_1 protein (Phaeodactylum tricornutum) - STRING interaction network
"TIM_1" - Triosephosphate isomerase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TIM_1Triosephosphate isomerase (268 aa)    
Predicted Functional Partners:
Phatr29157
Phosphoglycerate kinase (441 aa)
  0.999
PGK
Phosphoglycerate kinase (448 aa)
  0.999
Phatr14792
Phosphoglycerate kinase (432 aa)
  0.996
GPI_2
Glucose-6-phosphate isomerase (551 aa)
   
  0.996
GapC4
Predicted protein (336 aa)
 
  0.996
GapC1
Glyceraldehyde-3-phosphate dehydrogenase (379 aa)
 
  0.996
FbaC2
Fructose-1,6-bisphosphate aldolase (439 aa)
   
  0.995
GapC2a
Glyceraldehyde-3-phosphate dehydrogenase (334 aa)
 
  0.995
GAPDH_3
Predicted protein (351 aa)
 
  0.995
Fba3
Cytosolic class II aldolase (400 aa)
   
  0.994
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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