STRINGSTRING
Phatr54789 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr54789" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr54789Predicted protein (1205 aa)    
Predicted Functional Partners:
AP3sigma
Predicted protein (150 aa)
       
  0.976
AP3delta
Predicted protein (1277 aa)
     
 
  0.968
AP3mu
Predicted protein (416 aa)
     
 
  0.968
AP1alpha
Predicted protein (1019 aa)
     
  0.895
Phatr16891
Predicted protein (450 aa)
     
  0.862
Phatr13511
Predicted protein (939 aa)
     
  0.862
Phatr21929
Predicted protein; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network (1270 aa)
     
  0.841
COPgamma
Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (910 aa)
     
  0.840
AP1mu
Predicted protein (439 aa)
     
  0.834
AP4mu
Predicted protein (470 aa)
     
  0.834
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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