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STRINGSTRING
CCDA protein (Phaeodactylum tricornutum) - STRING interaction network
"CCDA" - Biogenesis protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDABiogenesis protein (382 aa)    
Predicted Functional Partners:
Phatr48122
Predicted protein (366 aa)
   
   
  0.661
hemC
Hydroxymethylbilane synthase (329 aa)
   
   
  0.606
Phatr48534
Predicted protein (1026 aa)
           
  0.600
PPO
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX (520 aa)
         
  0.583
OEE3
Oxygen-evolving enhancer protein 3 (200 aa)
           
  0.519
CPF2
Cry-dash from the cryptochrome/photolyase family (610 aa)
           
  0.468
HemF_1
Coproporphyrinogen III oxidase (304 aa)
           
  0.457
Phatr14192
Predicted protein; Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family (311 aa)
   
   
  0.428
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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