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CHC protein (Phaeodactylum tricornutum) - STRING interaction network
"CHC" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHCPredicted protein; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (1702 aa)    
Predicted Functional Partners:
Phatr8741
Predicted protein (92 aa)
       
  0.947
Phatr42442
Predicted protein (980 aa)
     
  0.897
Phatrdraft1735
Predicted protein (890 aa)
     
  0.854
AP4beta
Predicted protein (805 aa)
     
  0.854
AP1alpha
Predicted protein (1019 aa)
     
  0.850
ARP1
Actin related protein (391 aa)
     
  0.786
COPbeta
Predicted protein; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (978 aa)
     
  0.780
Phatr49017
Predicted protein (869 aa)
       
  0.769
Phatr47010
Predicted protein (1133 aa)
     
   
  0.764
Phatr54789
Predicted protein (1205 aa)
     
  0.743
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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